CDS

Accession Number TCMCG016C23227
gbkey CDS
Protein Id OMO59843.1
Location complement(join(50014..50543,50667..51314,51487..51515,52046..52506,53546..53670,53797..54085,54554..55694,56564..57178,57287..58827))
Organism Corchorus capsularis
locus_tag CCACVL1_24578

Protein

Length 1792aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01013842.1
Definition Zinc finger, PHD-type [Corchorus capsularis]
Locus_tag CCACVL1_24578

EGGNOG-MAPPER Annotation

COG_category BK
Description embryonic placenta development
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000122        [VIEW IN EMBL-EBI]
GO:0000228        [VIEW IN EMBL-EBI]
GO:0000785        [VIEW IN EMBL-EBI]
GO:0000790        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006338        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006357        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007399        [VIEW IN EMBL-EBI]
GO:0007417        [VIEW IN EMBL-EBI]
GO:0007420        [VIEW IN EMBL-EBI]
GO:0008134        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016589        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0031010        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043565        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044454        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045893        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048513        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060322        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070603        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:1904949        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAGTTTGTGGGCAAATCCGTGAAGAAGAAGTCCAAAGGGTTTGGTGTTTTCTCGGGAACTGTTAATTCCTTTGATTCTTCATCTGGGTTTTTCGAGATCGTGTACGAGGACGGCGATTCCGAGGAACTCAACTTCCACGAAGTTGCTTCGCTTATCATGGCGGATGATCCTAACCCAACCTACGAGACCAGAACAGAGCCGGGAGTGGAGGTTGTCCGTGAGAAGCCGAGAGTTGGAAGGCCCAGGAAACGACGCCGTGTTGACAGGAAAGCTCGTGCAGGTAATTTAGAGAAGGAAACCCTAGAGAGTAATAGGAATGGGGATTTGAATAGAAATGTTGATTTGAATGAAGGGTTTGTTGGGAATTTGGAGGAAAATGGGGGGTTTAATGGGAATTTGAATGAAACCCTAGATGAGAAGGGAGTTGGGTCTCGAAGAGATTTGAATTTGAATTTGGATAACGGGAATGTTGAAGTGAAAAATGGGATTGATTTGAATTCTTCTGGATTTGATTTGAATTTAAATGATACTTATTACAACAATAATTATTTAGATGATGCTGGGAATTGTTGTGGAGGGGGAGAGAATTTGAAGAAGAGAGGGTGTATTGATTTGAATTTGGACGCTAATTGTGACTTGGAAGACAATATTAATGTTAATTGTGAAACCCAGAGGAGGGAATGTGGTTTTGATTTGAATTTGGGGATTGATGAGGAGATTGGTAAGGATTCTATTGATGGTAACTGTGGAGGGCAAGTGCAAGTCAGAGAATCTACCACTTTTGCTGAGATAGCTCAAGTAACACCAAAAATGGAGCGAAGTCATCTGGAAGAGAATGTTTCTAAGAAGGATCTGAGGGAAGATCGTTCAGATTTAGGGTTTATTGGAGGAAACCTTGAGAAGGGTGGTGGTTTGCATTTAGATGTTGTCAAGGCTGATGATTCTCGGGGAGGTGGGTTCGAGGGTGTTCCTGAGCCTGGCACTGCAGTAATTGATGGGTGCCAAGCTGATAATGGAAGTTCATACAAACAAGCTAGTGGGCGGAGGAAGAGAAGAAAGGTTTCTAATGATTTGGATTCTACAACGGAAAGGGTTTTGAGAAGAAGTGCTCGCAGAGGATCTGCTATAAATCATGTTCCAAGCACACCACTAACAACAACAACATGTGCAATTGGTGATTTATCAGCATCTCCTTCAGCTAGTGCAGTAACTGAGGAGAAGCCAGTTAGGTCAGGTCGTAAAGTGTGTGAAGAGCCTATTGTTCTTCCTCCGAAGCTGCAACTTCCACCATCTTCCAAGAATTTGAATTTGGATGGGATCTCTGTTCTTGATATTTTTTCTATTTATGCTTTGTTGAGGTCATTTAGTACTTTATTATTTTTAAGTCCCTTTGAGTTGGAGGATTTTGTGGCTGCAATGAAGTGCCAGTCTCCCAGCTCATTATTTGATTGTATTCATGTTTCCATTTTGCAAACTCTGAAAAAGCATTTGGAGTACCTATCTAATGAAGGTTCTGAGTCTGCTTCTGAATGTTTGAGGAGTCTTAATTGGAGTTTCTTGGACTCCATTACGTGGCCCATTTTCATGGTCGAGTATCTACTCTTTAATGGTTCAGGATTGAAATGTGGTTTTGATCTTAGTAGGTTGAAACTATTCAGAACTGACTATTACAAACAGCCTGTAACTGTTAAGGTTGAGATACTTCAGTGTTTGTGTGATGATATGATTGAGGTGGAAGCCATAAGATCTGAGCTTAATAGAAGGTCTTTGGCATCTGAGTCTGATATGGATTTTGATCGGAATATGAACATTGAGGTTTGCAAGAAAAGAAAAGCTGCTATGGACATGTCTGGTGGATCTGGCTTATGCGAGGATATGGTTGATGACACTAATGACTGGAACAGTGATGATTGCTGCCTTTGTAAGATGGATGGGAATTTAATATGCTGTGATGGCTGCCCTGCTGCTTACCATTCAAAGTGTGTTGGTGTTGTCAGTGCTCTTTTGCCTGAAGGTGACTGGTACTGCCCCGAGTGTGCAATTGACAAACACAAGCCTTGGATGAAACCACATAAATCACCTAGAGGAGCAGAGCTTTTGGGCATTGATCCTCATGGACGGTTATATTATAACAGCTCTGGTTATTTGTTAGTGTTAGATTCATGTGATGCTGAGTACTCGTTGAATTATTACCACCGAGATGATCTCAATGTTGTAATTGATGTGCTAAAATCTTCTAATGTTATGTATGGTGACATAATAAAAGCAATTCACAAGCAGTGGGATCTAGCTGTCAGCTCAAATGGAGCTAGTAGTAACCTGGACTCTCTGAATTCTGTTTGTTCAGAGGTACTCGTCAAGGAGCAAATTCCTACTGTTAAGACAACCCTACCAGCTGTCGCTTCTGCAGAAATATGTGCTATGAAAAATGAAACTGGCGATGATGGAAAACCAGAAGAGAAAGGAGTTGCCGAAAATTCTGGTCTTTTTGATGTTGAGGTTACAGAGTCTGCTAACTTAATGGATTCAGTGGCTGGAATAGATATCCCTTATATAAGTTCTGAAGGGTCGGCTGAAACAATGCAAATGAGTTCAGTCATTCATAACTTTCAGAAGCAAGGATCTGTTGAGTTGTCAAACCAATCTGAGATTCCAGAAAAATCCTCAAATGTTGAAGACCATTCTTTAGTATCTAGTAGTTTGGATACCAAGCAGGAAAGCAACATAAAGTTAGCACCTCAGCATACCCCATGTCTGGTTAATACAAAAAGAGGTGATTCAGGACAAAGACAGCCTGGGACTGGCTACATGAACTACTATAGTTTTGCCCAAAATGCTGCAGGAGTTGTAGAAGAGTTACTGCGTAAGCCATCAGAAAAAACAAATGAGGATTCCCTACAAACTTTAGAGGAGATTATTGCAATGCAGATGAAGGTTATTTTGAAAAAATGCAGCAAGTTTTGTTGGACCGATATCCATAACCAATATGCACATGCACGCAAAGAAGATTGTGGTTGGTGCTTCTCCTGTAGATATCCCACGGATGATACAGGTTGCTTGTTTAAAATTACTTCATGTGGTGCCCAAGAAGTCCCGAAAGAGATGCTTGGCCTTGAGTCAAAATGGAACAAGAAGGGCCATGTTATAGATCTTATGTGCCACATATTCTCTATTGAAAGTCGTCTGCATGGGCTTCTGTTGGGTCCGTGGCTGAATCCACAATATATCAAGATCTGGCATAAAAGCATTCTCAAGGCATCTGATATTACATCAGTCAAACATTTATTGCTAATGTTAGAGGCAAATCTGCATCATCTTGCCCTTTCAGCAGATTGGGTGAAACACATTGATTCCGCTGTCACCATGGGTTCAGCTTGTCATGTTATGACTGCTTCAAGTCGTGCATCTGCCAGGCATGGGGTTGCAAGAAAAAGGGGCAGGTACAATGATGGTGAGAGTAACCCTACTTCTAATTCTGCTGCAGGACCAAGTATTTGTTGGTGGAGGGGTGGTAGGGTTTCTCGTCAGTTATTCAACTGGAAGGTTTTACCTCGCTCTTTGGCTTCTAAGGCTGCTAGACAAGGCGGAGGCAAAAAGATTCCTGGCATACTTTATCCTGAGAGTTCAGATTTTGCTAAGAGAAGCAAATCTGTTGCATGGCGAGCTGCTGTTGATTCATCAACTAGTGTAGAACAACTTGCTTTCCAGGTTAGAGAACTTGATTCCAACATTAGGTGGGATGACATTGAAAACACTCACGCTCTCCCAACTTTAGATAAGGATTTTAAGAAATCTATCAGATTGTTTAAGAAATGTGTAGTGCGCCGGAAATCCATAGAGGGAGATGGGGTAAAGTATCTTCTTGATTTTGGGAAGAGAAGAAGCATTCCTGAGGTTGTCATGAAATATGGGACTGTCGTTGAAGAATCTTCAAGTGAAAGAAAGAAATATTGGTTGAATGAATCTTACGTGCCCTTGCATCTTTTGAAAAGTTTTGAAGAGAAGAGAATTGACCGTAAGTCTAGTAAGATGGTGTCTGGAAAATCTCCTGAGATCAGTGGGGTGGCAAAGAAGTTGTCCAAGGAAAGGGGGTTCTCCTATCTCTTCTCTAAAGCTGAAAGATCCGAGTACTATCAGTGTGGTCACTGTAACAAAGATGTCCTCATCAGGGAAGCTGTTTGCTGTCAGGGCTGCAAAGGATTTTTTCATAAGAGGCATGTCAGAAAATCTGCTGGAGCAATCATTTCTGAGTGCACATATACGTGCCACCGATGCCAAGCTGGGAAGTCTAGTGTTAATGCAAAAAGAGGGGGAAGTGACCCAAAAAGAGGAAAACGTGAGACAAAGGGGGCGAAGACCAACACAAAAAATGCAAAAAGACTGCCACAAAAAAGTAAGAAGGCTTCCACTAATTGCAAATCAGTACAGTCAAAAGACAATAAAAGGTCTTTGTCAGTACGGATGTCACTGCGACCACGTAAGGATAAAAAGGTTCCTGCTGGTGTGCCGCTTCGTCGTTCACCTAGGAAATTAAAGTACATTTCTGTGCAAAAGAAAAAGCCTGGTGTGAGCAAGAAAGGCAAACAGAAATCAAAGAAGAAAGCACCTAAGAAAACAAAGAAAAGCACTTCTTGGAAGAAGAAGAGAACAAGCGCTTATCACAGTTACTGGCTTAATGGTCTTCGGTTGTCTCATAAGCCAGACGATGAACGGGTGATGCATTTCCAAAGGAAAAAGTTCTTTGCCCCTTCTGATCATACAGCAATCAATCAACCGAAATGTCTTCTTTGTTGTGAAGCAGGATATGCATCTAATTCAAACTATCTTGCATGCGAAATTTGTGAAGAATGGTTTCATGGTGATGCTTACGGACTCAATTCCGAGAACAAAAGCAAGATTTTTGGATTTAGATGTCATGTCTGCCGTAACAGGGCCCCTCCTATCTGTCCCAATATGGTGGCTAAGGGAATTGATCAATCTCAATTGGCTGAGATGCAAAATGGTATTAGGACTGAATTTTCAGAGGAAGTACACGGTGCCTTAGTTTCCCAATGTCATGTAAATTCAAAAACAGAGTCTCCTTCAAGTGACACTCGTCAAGGTTCATTGGCAGCTGATGAGTGCTTGCAGAAAGAGGAGAAGTTAGATTCCAATTGTGATGGAAGTCAGAGTTCCGCCTTGGAACATAAGTTGGAATCAAATGGGACTGTACATGATGAGAAGCAGAATATAGATGCACAAAAAAATTCTGACAATGAATTGAAACCATATACACTAACATCTGATGAGAAAGTTATGTTGGAAGAGAGTAGAACCAATTCAGGAAATGATGTTACTGCAACTGCGGCTGATGAGGCAGAGTGCCCTTCTCATTGA
Protein:  
MEFVGKSVKKKSKGFGVFSGTVNSFDSSSGFFEIVYEDGDSEELNFHEVASLIMADDPNPTYETRTEPGVEVVREKPRVGRPRKRRRVDRKARAGNLEKETLESNRNGDLNRNVDLNEGFVGNLEENGGFNGNLNETLDEKGVGSRRDLNLNLDNGNVEVKNGIDLNSSGFDLNLNDTYYNNNYLDDAGNCCGGGENLKKRGCIDLNLDANCDLEDNINVNCETQRRECGFDLNLGIDEEIGKDSIDGNCGGQVQVRESTTFAEIAQVTPKMERSHLEENVSKKDLREDRSDLGFIGGNLEKGGGLHLDVVKADDSRGGGFEGVPEPGTAVIDGCQADNGSSYKQASGRRKRRKVSNDLDSTTERVLRRSARRGSAINHVPSTPLTTTTCAIGDLSASPSASAVTEEKPVRSGRKVCEEPIVLPPKLQLPPSSKNLNLDGISVLDIFSIYALLRSFSTLLFLSPFELEDFVAAMKCQSPSSLFDCIHVSILQTLKKHLEYLSNEGSESASECLRSLNWSFLDSITWPIFMVEYLLFNGSGLKCGFDLSRLKLFRTDYYKQPVTVKVEILQCLCDDMIEVEAIRSELNRRSLASESDMDFDRNMNIEVCKKRKAAMDMSGGSGLCEDMVDDTNDWNSDDCCLCKMDGNLICCDGCPAAYHSKCVGVVSALLPEGDWYCPECAIDKHKPWMKPHKSPRGAELLGIDPHGRLYYNSSGYLLVLDSCDAEYSLNYYHRDDLNVVIDVLKSSNVMYGDIIKAIHKQWDLAVSSNGASSNLDSLNSVCSEVLVKEQIPTVKTTLPAVASAEICAMKNETGDDGKPEEKGVAENSGLFDVEVTESANLMDSVAGIDIPYISSEGSAETMQMSSVIHNFQKQGSVELSNQSEIPEKSSNVEDHSLVSSSLDTKQESNIKLAPQHTPCLVNTKRGDSGQRQPGTGYMNYYSFAQNAAGVVEELLRKPSEKTNEDSLQTLEEIIAMQMKVILKKCSKFCWTDIHNQYAHARKEDCGWCFSCRYPTDDTGCLFKITSCGAQEVPKEMLGLESKWNKKGHVIDLMCHIFSIESRLHGLLLGPWLNPQYIKIWHKSILKASDITSVKHLLLMLEANLHHLALSADWVKHIDSAVTMGSACHVMTASSRASARHGVARKRGRYNDGESNPTSNSAAGPSICWWRGGRVSRQLFNWKVLPRSLASKAARQGGGKKIPGILYPESSDFAKRSKSVAWRAAVDSSTSVEQLAFQVRELDSNIRWDDIENTHALPTLDKDFKKSIRLFKKCVVRRKSIEGDGVKYLLDFGKRRSIPEVVMKYGTVVEESSSERKKYWLNESYVPLHLLKSFEEKRIDRKSSKMVSGKSPEISGVAKKLSKERGFSYLFSKAERSEYYQCGHCNKDVLIREAVCCQGCKGFFHKRHVRKSAGAIISECTYTCHRCQAGKSSVNAKRGGSDPKRGKRETKGAKTNTKNAKRLPQKSKKASTNCKSVQSKDNKRSLSVRMSLRPRKDKKVPAGVPLRRSPRKLKYISVQKKKPGVSKKGKQKSKKKAPKKTKKSTSWKKKRTSAYHSYWLNGLRLSHKPDDERVMHFQRKKFFAPSDHTAINQPKCLLCCEAGYASNSNYLACEICEEWFHGDAYGLNSENKSKIFGFRCHVCRNRAPPICPNMVAKGIDQSQLAEMQNGIRTEFSEEVHGALVSQCHVNSKTESPSSDTRQGSLAADECLQKEEKLDSNCDGSQSSALEHKLESNGTVHDEKQNIDAQKNSDNELKPYTLTSDEKVMLEESRTNSGNDVTATAADEAECPSH